ISO TR 039852021.docx

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1、TECHNICA1.REPORTISO/TR3985editionFirst2021-05Biotechno1.ogyDatapub1.icationPre1.iminaryconsiderationsandconceptsBiotechno1.ogiePub1.icationdedonnesConsiderationsetconceptsPrqiminaireSCOPYRIGHTPROTECTEDDOCUMENTISO2021岫rkdea/山thUcdOthcnviscS|MMTftt1.iwcorrifKti!ndinehDvriwiiiJiioKRiwp1.imu3Uatioij1.io

2、tocpymg.pnWicationpstingontheinternetoranintranet,withoutpriorwrittenpermission.PermissioncanherequestedfromeitherISOattheaddressbe1.owOr1.sOXSmemberbodyinthecountryoftherequester.%,tft晒Iandonnet8CH-1214*crnicr,GenevaPhone：M1.22749O1.11Pub1.ishedinSwitzerhndContentsForewordvIitroductionScope44.4一5Ge

3、nera1.Currenttechno1.ogies,approachesandtheirf1.awsNormativereferencesTermsanddefinitionsAbbreviatedtermsPrincip1.es5.3 Sffaic1.ardsMindrhestTg?iuH：tn:(J6中照TiIithttesharingandreuse(5.3.2 Dataftndabi1.ity65.3.3 Datamachineandhumaninterpretabi1.ity65.3.4 限8槌附斜8三那dtec撇悯融项V1.din展快晦睢entions65.3.6 Data1.o

4、catabi1.ityusingmu1.tip1.equeries75.4 Additiona1.desirab1.eattributes755Dataformat1.inkagetoapub1.ishedandopen1.yaccessib1.edocumentdescribingtheformat75.4.3用酬廊mentinfo用的8R快丽随icesforCreatingwebfriend1.yandsearchenginecraw1.ab1.edatadocuments75.5 Essentia1.considerations75.5.2 SHndAcmpdatnacrossmu1.t

5、ip1.edatasources75.5.3 Embeddingonto1.ogica1.descriptions9554PSeUdo.9Majorcha1.1.enges106.1 (jncro1.1062Domain106.3 Rcgiona1.ization.一.一.106.4 Proprietarydata6.5 1.argenumberofexistingbio-onto1.ogies,contro1.1.edvocabu1.ariesandtermino1.ogies106.6 1.argenumberofexistingdatarepositoriesandConespondin

6、gdomainspecific6.7 4ftfcM11QfbindingWgCnfies(agntiong1.cucionbph.i!anthr9pjcr1EXambIiBF肝tingnationa1.andregiona1.standardsorrequirementsfordatJ1sharingorpub1.ication117.1 Genera)117.3 OSkkada-._.一.一.一.一.一.一一.一.一.117.4 EuropeanUnion117.5 Germany127.6 御限的2触叫.一._._._127.8 India1279JaPan2Existing1.ega1.

7、requirementsfordataprotection.一.一.一.1291 。Timingofdatapub1.ication.1311 Costsofdatapub1.ication1312 Archiva1.data1313 Va1.idationandverificationofcomp1.iance13Affectedstakeho1.dercategories13Annex A (informative)Searchabi1.ityofscientificcontentontheweb14Annex B (informative)Examp1.eenhancedannotati

8、onoftextdocuments16Bib1.iography“一”一MMBBaM17ForewordISO(theInternationa1.OrganizationforStandardization)isawor1.dwidefederationofnationa1.standardsB1.KhUgh(ISottmhntffebMdmi)tdihwceku*KfiPhdngbOdyIntQHi6taiNtrtjkightheeditoria1.ru1.esoftheSOIECDirectives,Part2(see1.tipsvwwjso.orgdirc1.1.ivesand-po1.

9、icie$.htm1.).RMionnghts.dten福娱第刷祁驱nsi海腓田甜初超副倒自doc咻跳甜城银总subject、anypatentrightsidentifiedduringthedeve1.opmentCnhAdogmantMj1.1.beintheIntroductionand/orontheISO1.istofpatentdec1.arationsreceived(secwww.iso.org/patents).Anytradeusedinthisconstitutenameendorsement,domentisinformationgivenfortheconvenie

10、nceofusersanddoesnotForanexp1.anationofthevo1.untarynatureofstandards,themeaningofISOspecifictermsand愿的弱玻鼎ationcono8PgA5!utranscriptomics,trans1.atomics,proteomics,metaho1.omics,Iipidomics,g)ycomics,enzymo1.ogy,irnmunochemistry,1.ifescienceimaging,syntheticbio1.ogy,systemsbio1.ogy,systemsmedicineand

11、AIatCdNdhtivereferences?hereTermsand用efi*it翻hgcnc41thisdocument.Forthepurposesofthisdocument,thefo1.1.owingtermsanddefinitionsapp1.y.ISOandIECmaintaintermino1.ogica1.databasesforuseinstandardizationatthefo1.1.owingaddresses:ISOOn1.inebrowsingp1.atform:avai1.ab1.eat4ttp*rwweFgbpj-1ECE1.ectropedia:ava

12、i1.ab1.eathttp:/www.e1.ectiopedia.org/bigdatabigdataextensivedatasets(3.7)primari1.yinthedata(3.2)characteristicsofvo1.ume,variety,ve1.ocity,and/orvariabi1.itythatrequireasca1.ab1.etechno1.ogyforefficientstorage,manipu1.ation,management,andana1.ysishkrtdtkxbwrt1.9UiigBigdatxtenshfdxtaDRsedinmanyways

13、forexamp1.easthenameofthesca1.ab1.etechno1.ogy*Note2toentrr:Bigdatainc1.udesanydatathatareaggregatedintoarepositoryofmuch1.argersizethanthe国(P1.tf故A,theco1.1.ectionofabstractsofbio1.ogica1.pub1.icationsrepresentsabigdatasetSOURCE:ISO1EC20546:2019,3.1.2,modified0rBigdatawasgivenasana1.ternativeterma

14、ndNote2toentrywasadded.)3.2data(SOURCE:1SOIEC2382:2015,2121272,modifiedA1.1.threenoteswereremoved.dataarchiverarchiverNote1toentry:Anarchiverreceivesdatafromaproducerandcanbefundedbythesameordifferentpayer.dataconsumerconsumeruserNote1toentry:Intheresearchdomain,adataconsumerisascientistorresearchgr

15、oup.3.5dataproducerproducerNotebetocontract1.aboratory.domainproduceristypica1.1.yaresearcher,inthecommercia1.domaintheproducer3.6datapub1.icationpub1.icationpub1.icrepositorySuchindudesGENBANK.Datapub1.icationpub!icationsinjourna1.snota1.ways,sharingbydataentityNOteobtainedthedata,widercommunityref

16、erscodataconsumers,otherthantheindividua1.sororganization3.7datasetdatasetSOURCE:3.8datasharingsharing19115-1:2014,4.3,modified*datasef,wasgivenasana1.ternativetermandNote1toNote1toentry:Dataarenottru1.yshared,iftheycannotbefound.reinterpretab1.erepresentationofinformationinaforma1.izedmannersuitab1

17、eforcommunication,interpretationorprocessing3.8individua1.ororganizationresponsib1.eforthe1.ong-termpersistenceofdataandtheaccesstothatdata3.9individua1.ororganizationthatusesdataasastartingpointNote2toentry:Inthemedica1.domain,adataconsumercanbeaphysicianorpatient,insomecases,consumercana1.sobepay

18、er.organizationorindividua1.thatca11iesoutanexperimentormeasurementfundedbyapayer(3.11),andproducingadatasetcan1aentry：Intheresearchanyofsevera1.fo11nsinwhichdataaremadeavai1.ab1.etoawidercommunityNote1entry：Thisastraditiona1.scientifictypica1.1.y,thoughaswe1.1.Checarriedoutofanviaadedicatedtothe1.1

19、ectionanddisseminationofdata,egadataarchiver(33).that2entr):Theidentifiab1.eco1.1.ectionofdataentrywasISOdeIeted.makingdata(c.g.numerica1.,textua1.,images)avai1.ab1.eto,andfindab1.eby,others3.9datasharingp1.an3.10metadataneta-data(SOURCE:ISO1EC11179-1:2015,3.2.16,modified11w1.ada1.aWaSaddedasana1.t

20、ernativeterm.payerOrganiZaHon,entry:PrWa1.eresearchorganiztionorganfzationmedica1.casenationa1.researchInsuranceph1.1.anthropic3.12proprietarydatacompany,entry:Proprietarydataindividua1.suchnotIimitcdrccords.proprietarytoanorganizationsuchasa3.13pub1.icdata3.141toentry：Pub1.icdataaretheoppositeofpro

21、prietarydata(3.12).regiona1.izationusagesandmeaningsCommasnoton1.yperiods(.)innumericdocumentbuta1.sothedateformatsandvarying3.15reificationfromJSONentry:XM1.Examp1.esinc1.udeexpressingorconvertingstructureddatafromoneformattoanother,suchassametopicmapaccordingtoISO/1EC13250-2:2006,3.11.repurposeden

22、tr)r:usedtoeamp1.e,repurposingmorpho1.ogy,origina1.1.yco1.1.ectedforce1.1.countingpurposesmightbeforma1.izeddescriptionofhowadataproducer(3.5)wi1.1.accomp1.ishthetaskofdatasharing(3.8)datathatdefineanddescribeotherdata3.11organizationresponsib1.eforfundingresearchNote1aThiscanbegovernmentor,thesucho

23、rprivateinsti1.ute,organization.datastoredinsuchawaythatbydesignandimp1.ementationtheyarenotaccessib1.etoeveryoneNote1toordatatoaninc1.uderbutareashea1.thto,dataNote2toentry：Proprieurdataaretheoppositeofpub1.icdata(3.13).datastoredinsuchawaythatbydesignandimp1.ementationtheyareaccessib1.etoeveryoneN

24、oteprocessofexpressingatextordatainaparticu1.arhuman1.anguageNote1toentry：ThisOf1.ndudes(,)andthetextua1.partoftheformats.expressionofdataorknow1.edgeinaspecific1.anguageorsyntaxNote1totoNote2toentrf:ReInCaUOna1.someansmakingatopicrepresentthesubjectofanothertopicmapconstructinthe3.16practiceofusing

25、datainamannerotherthanwhichitwasorigina1.1.yco1.1.ectedNote1toandFormeasurece1.1.micoscopeimages4AbbreviatedtermsBBSRCBiotechno1.ogjrandBio1.ogica1.SciencesResearchCounci1.ChEB1.Chemica1.EntitiesOfBio1.ogica1.InterestVEGFaVascu1.arEndothe1.ia1.GrowthFactoraXM1.Extensib1.eMarkup1.anguage5Princip1.es5

26、1Genera1.Datasharingbydefinitionismorethansimp1.ythepub1.icationofsummarystatisticsintab1.es.Ita1.soinc1.udessharingofrawdatafromwhichthesummariesaregenerated8.Thecha1.1.engetobothresearchersandfundingagenciesisdeterminingwhatandhowdataaresharedandwhatmetricsmightbeusedtojudgethesuitabi1.ityofashar

27、ingp1.an.Forexamp1.e,thebreadthand出理性陶踹颇Rf1.fe埠双辎珀由rgheori，解购HhStitUte蚣hMiNea!MH)ijfr网隹娜占自日山感及resu1.ttheNIHencouragesdiscussionofdatasharingstandardsandpracticesbetweendiscip1.inesandprofessiona1.societiestocreateasupportivedatasharingenvironment(8.标fr睡为MP!ft曲曲ftiition,也加佻我瞑惘厢砒Indiggrfgfij喻卿岫解WU的PeC

28、味W4Hdataacrosstechno1.ogydomains,1.eavingopenthepotentia1.forineffectivedatasharing.RO1.iAukr1.1.QNAi1.ShCQ制皿a1.udfpa0tin.a1.1.fi1.ddmhvdid2dtWedtfecienuistcncecommunitiescanbeusedforda网加型蜡用fiWMnOtationacrossmu1.tip1.edatasources(Somitogenesisexamp1.e)(pmV3nracMKctn%ffkutPathwaymode1.Mu1.ticc1.1.mod

29、e1.MarkupdescribingtheBioTcchdomainspecificdataiCommonmarkupidescribingthejbio1.ogica1.system，1.pctck*nIVMvWmbfy11vwI1.cpror*C(1.TVtnfMMC.*-T，SpoCkKtoePruoritfvbfyo0t*vtMS*PnXwu:c4utDjrwsW11fBHyem1.n5WdeMiherBadrtehnok)gjsdohurn)(jhhgi)t(t1.tt-e-I)aUiitUstau7Miesisrpiutadataspecification.Thereisacri

30、tica1.needforacommon,high1.eve1.annotationschemethatdescribesthebio1.ogy(h1.gh1.ig1.edas)inc1.udedinanexperimentormode1.ina(b1.o)(echno1.ogyindependentfashion.Figure1Mu1.tip1.e(bio)techno1.ogiescanbeapp1.iedtostudyabio1.ogica1.orbiomedica1.prob1.em.Consistentannotationofthebio1.ogica1.contentofdataa

31、imsat:a) techno1.og)rdomainindependence(i.e.notboundtoacertainmethodortechno1.ogy);b) findabi1.ityofthedata;C)datainteroperabi1.ity(faci1.itationofdataintegration);d)faci1.ita1.ionofdatareuseandrepurposing.5.2 Currenttechno1.ogies,approachesandtheirf1.awsFactorsthatcancontributetothe1.ackofeffective

32、sharingandreuseofbio1.ogica1.datainc1.ude:a) Manycommunitiesandtheirdataformatswereestab1.ishedbeforetheinternetandsearchengineswereavai1.ab1.e.b) 7bdHkd8gtripver3gubJjshedoron1.ypartia1.1.ypub1.ished(e.g.on1.yavai1.ab1.eintheformofasummaryc) Thedataarepub1.ishedinaform,formator1.ocationthatisnoteas

33、i1.yinterpretedor1.ocated.d) d曲由翻Tarepu1.三h21.ftHIMwM1.fdingsui611ta1.oqMuihetermsusedinthe5.3 Standardsandbestpracticestofaci1.itatedatasharingandreuse5.3.1 Maximizingva1.uetothepayerAnystandardaimingtofaci1.itatedatasharingandreusemaximizesva1.uetothepayerbymaximizing0三yerrw11riberddftM6prdnct.usesofdata.Usesofdataoftenextendbeyondwhatwasenvisionedbythe5.3.2DataAndabi1.ityDatafindabi1.itybyauthorizedusersisessentia).Inthebestcase,itwi1.1.notbenecessarytofirst1.ocatetbdUabeHWa1.QItnnittinidatsQMgissh噌SnTdRtaeardi坤PIka